* WALP16 Generation * set charmmdir = . !Read topologie open read card unit 10 name @charmmdir/top_all27_prot_lipid.rtf" read rtf card unit 10 !Read parameters open read card unit 20 name @charmmdir/par_all27_prot_lipid.prm read para card unit 20 read sequence card * sequence of WALP16 * 16 ! 1 2 3 4 5 6 7 8 9 10 GLY TRP TRP LEU ALA LEU ALA LEU ALA LEU ALA LEU ALA TRP TRP ALA generate PRO0 setup first ACE last CT3 coor stat select type CA end set ntot = ?nsel set i = 1 label ic_edit calc j = @i - 1 calc k = @i + 1 if j .ge. 1 then IC EDIT DIHE @j C @i N @i CA @i C -57.8 ! PHI END endif if k .le. @ntot then IC EDIT DIHE @i N @i CA @i C @k N -47.0 ! PSI END endif incr i by 1 if i .le. @ntot goto ic_edit ic param ic seed 1 N 1 CA 1 C ic build hbuild NBOND atom switch cdie vdw vswitch bycb - ctonnb 20.0 ctofnb 20.0 cutnb 24.0 mini sd nstep 50 nprint 10 step 0.005 inbfrq -1 imgfrq -1 mini abnr nstep 50 nprint 10 step 0.005 inbfrq -1 imgfrq -1 coor stat coor orie coor stat coor rotate ydir 1.0 phi 90.0 coor stat open write card unit 10 name pept.pdb write coor pdb unit 10 close unit 10 open write card unit 10 name pept.psf write psf card unit 10 close unit 10 stop