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contact.pl 1vii.exp.pdb 1vii.exp.min.pdb |
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compares the residue contact map between two structures and reports
the number of contacts present in the second structure with
respect to the first. Also reported is the continuous quantity rho
that takes near-contacts into consideration.
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23 contacts ( fraction: 0.958333 ), rho: 0.999182
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contact.pl 1vii.exp.pdb |
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writes the contact list for the given structure to standard output
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2 7 3.525115
2 10 3.383307
2 11 3.541492
2 15 2.839893
2 34 2.930046
2 36 3.797043
7 12 3.996071
7 13 2.808753
7 14 2.851043
7 15 2.858498
7 18 3.632217
10 33 3.377613
10 34 2.751064
11 18 3.093442
11 29 3.886256
...
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contact.pl -read 1vii.exp.contacts 1vii.exp.min.pdb |
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compares the residue contact map of the given structure with
the contact list read from a file and reports
the number of contacts present with respect to the reference.
Also reported is the continuous quantity rho
that takes near-contacts into consideration.
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23 contacts ( fraction: 0.958333 ), rho: 0.999182
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contact.pl -l 10:21 -list 1vii.exp.pdb 1vii.exp.min.pdb |
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compares the residue contact map involving only contacts with residues 10
through 21 between two structures. In addition to the fraction of
contacts present in the second structure a detailed list is printed
out for all contacts with the minimum distances in the reference and
test structures.
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19 contacts ( fraction: 0.950000 ), rho: 0.999018
LEU:2 - VAL:10 3.383307 4.250682
* LEU:2 - PHE:11 3.541492 3.911385
* LEU:2 - ARG:15 2.839893 2.706345
* PHE:7 - GLY:12 3.996071 2.764539
* PHE:7 - MET:13 2.808753 3.330530
* PHE:7 - THR:14 2.851043 3.908893
* PHE:7 - ARG:15 2.858498 3.255971
* PHE:7 - PHE:18 3.632217 3.699490
* VAL:10 - LYS:33 3.377613 2.759139
* VAL:10 - GLY:34 2.751064 4.118640
* PHE:11 - PHE:18 3.093442 3.663265
* PHE:11 - LEU:29 3.886256 3.917106
* PHE:11 - LYS:33 3.998822 3.902796
* PHE:11 - GLY:34 3.780081 3.779406
...
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