2004 Journal Articles A. D. Mackerell Jr., M. Feig and C. L. Brooks III Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations Journal of Computational Chemistry, 2004, 25, 1400-15.  PubMed   A. D. MacKerell Jr., M. Feig and C. L. Brooks III Improved treatment of the protein backbone in empirical force fields Journal of the Americal Chemical Society, 2004, 126, 698-9.  PubMed   J. Karanicolas and C.L. Brooks III An evolution of minimalist models for protein folding: from the behavior of protein-like polymers to protein function Biosilico, 2004, 2, 127-133.   M. Feig, J. Karanicolas and C. L. Brooks III MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology Journal of Molecular Graphics and Modeling, 2004, 22, 377-95.  PubMed   M. Feig, W. Im and C. L. Brooks III Implicit solvation based on generalized Born theory in different dielectric environments Journal of Chemical Physics, 2004, 120, 903-911.   M. Feig and C. L. Brooks III Recent advances in the development and application of implicit solvent models in biomolecule simulations Current Opinion in Structural Biology, 2004, 14, 217-24.  PubMed   2003 Journal Articles M. S. Lee, M. Feig, F. R. Salsbury Jr. and C. L. Brooks III New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations Journal of Computational Chemistry, 2003, 24, 1348-56.  PubMed   J. Karanicolas and C. L. Brooks III Improved Go-like Models Demonstrate the Robustness of Protein Folding Mechanisms Towards Non-native Interactions Journal of Molecular Biology, 2003, 334, 309-25.  PubMed   W. Im, M. Feig and C. L. Brooks III An implicit membrane generalized born theory for the study of structure, stability, and interactions of membrane proteins Biophysical Journal, 2003, 85, 2900-18.  PubMed   W. Im, M. S. Lee and C. L. Brooks III Generalized born model with a simple smoothing function Journal of Computational Chemistry, 2003, 24, 1691-702.  PubMed   Michael Feig, Alexander D. MacKerell Jr. and Charles L. Brooks III Force Field Influence on the Observation of .pi.-Helical Protein Structures in Molecular Dynamics Simulations Journal of Physical Chemistry B, 2003, 107, 2831-2836.   2002 Journal Articles M. S. Lee, F. R. Salsbury Jr. and C. L. Brooks III Novel generalized Born methods Journal of Chemical Physics, 2002, 116, 10606-10614.   J. Karanicolas and C. L. Brooks III The origins of asymmetry in the folding transition states of protein L and protein G Protein Science, 2002, 11, 2351-61.  PubMed   B. N. Dominy and C. L. Brooks III Identifying native-like protein structures using physics-based potentials Journal of Computational Chemistry, 2002, 23, 147-60.  PubMed   K. V. Damodaran, V. S. Reddy, J. E. Johnson and C. L. Brooks III A general method to quantify quasi-equivalence in icosahedral viruses Journal of Molecular Biology, 2002, 324, 723-37.  PubMed   2000 Journal Articles M. Feig, P. Rotkiewicz, A. Kolinski, J. Skolnick and C. L. Brooks III Accurate reconstruction of all-atom protein representations from side-chain-based low-resolution models Proteins: Structure, Function, and Genetics, 2000, 41, 86-97.  PubMed   B.D. Bursulaya and C. L. Brooks III Comparative Study of the Folding Free Energy Landscape of a Three-Stranded Beta Sheet Protein with Explicit and Implicit Solvent Models Journal of Physical Chemistry B, 2000, 104, 12378-12383.