2004 Journal Articles A. D. Mackerell Jr., M. Feig and C. L. Brooks III Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations Journal of Computational Chemistry, 2004, 25, 1400-15.  PubMed   A. D. MacKerell Jr., M. Feig and C. L. Brooks III Improved treatment of the protein backbone in empirical force fields Journal of the Americal Chemical Society, 2004, 126, 698-9.  PubMed   W. Im and C. L. Brooks III De novo folding of membrane proteins: an exploration of the structure and NMR properties of the fd coat protein Journal of Molecular Biology, 2004, 337, 513-9.  PubMed   M. Feig, A. Onufriev, M. S. Lee, W. Im, D. A. Case and C. L. Brooks III Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures Journal of Computational Chemistry, 2004, 25, 265-84.  PubMed   2003 Journal Articles Y. Z. Ohkubo and C. L. Brooks III Exploring Flory's isolated-pair hypothesis: statistical mechanics of helix-coil transitions in polyalanine and the C-peptide from RNase A Proceedings of the National Academy of Sciences, U.S.A., 2003, 100, 13916-21.  PubMed   J. Karanicolas and C. L. Brooks III The importance of explicit chain representation in protein folding models: an examination of Ising-like models Proteins: Structure, Function, and Genetics, 2003, 53, 740-7.  PubMed   J. Karanicolas and C. L. Brooks III Improved Go-like Models Demonstrate the Robustness of Protein Folding Mechanisms Towards Non-native Interactions Journal of Molecular Biology, 2003, 334, 309-25.  PubMed   J. Karanicolas and C. L. Brooks III The structural basis for biphasic kinetics in the folding of the WW domain from a formin-binding protein: lessons for protein design? Proceedings of the National Academy of Sciences, U.S.A., 2003, 100, 3954-9.  PubMed   W. Im, M. Feig and C. L. Brooks III An implicit membrane generalized born theory for the study of structure, stability, and interactions of membrane proteins Biophysical Journal, 2003, 85, 2900-18.  PubMed   2002 Journal Articles J. Karanicolas and C. L. Brooks III The origins of asymmetry in the folding transition states of protein L and protein G Protein Science, 2002, 11, 2351-61.  PubMed   A. Fiser, M. Feig, C. L. Brooks III and A. Sali Evolution and physics in comparative protein structure modeling Accounts of Chemical Research, 2002, 35, 413-21.  PubMed   M. Feig and C. L. Brooks III Evaluating CASP4 predictions with physical energy functions Proteins: Structure, Function, and Genetics, 2002, 49, 232-45.  PubMed   N Rathore and J. J. de Pablo Monte Carlo simulation of proteins through a random walk in energy space Journal of Chemical Physics, 2002, 116, 7225-7230.